Cheap Flights from El Nido (ENI) to Manila (MNL)

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Travellers and cabin class, 1 Adult, Economy

Compare El Nido to Manila Ninoy Aquino flight deals

Find the cheapest month or even day of the year to fly to Manila Ninoy Aquino

Book the best Manila Ninoy Aquino fare with no extra fees

Flight deals Cheapest month Find the best route Route info FAQs Tips and advice

Flight deals from El Nido to Manila Ninoy Aquino

Looking for a cheap last-minute deal or the best return flight from El Nido Airport to Manila Ninoy Aquino Airport? If you want to travel next month, return fares start from $340. Find the lowest prices on one-way and return tickets right here.

Manila.$340 per passenger.Departing Wed, 21 Oct, returning Wed, 28 Oct.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Wed, 21 Oct, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Wed, 28 Oct, arriving in El Nido.Price includes taxes and charges.From $340, select.

Manila.$382 per passenger.Departing Fri, 14 May, returning Wed, 26 May.Return flight with Cebgo and Philippine Airlines.Outbound indirect flight with Cebgo, departs from El Nido on Fri, 14 May, arriving in Manila Ninoy Aquino.Inbound indirect flight with Philippine Airlines, departs from Manila Ninoy Aquino on Wed, 26 May, arriving in El Nido.Price includes taxes and charges.From $382, select.

Manila.$422 per passenger.Departing Tue, 2 Feb, returning Fri, 5 Feb.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Tue, 2 Feb, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Fri, 5 Feb, arriving in El Nido.Price includes taxes and charges.From $422, select.

Manila.$424 per passenger.Departing Wed, 17 Mar, returning Sun, 21 Mar.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Wed, 17 Mar, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Sun, 21 Mar, arriving in El Nido.Price includes taxes and charges.From $424, select.

Manila.$426 per passenger.Departing Thu, 19 Nov, returning Sun, 22 Nov.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Thu, 19 Nov, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Sun, 22 Nov, arriving in El Nido.Price includes taxes and charges.From $426, select.

Manila.$433 per passenger.Departing Thu, 24 Dec, returning Sat, 9 Jan.Return flight with Cebgo and Cebu Pacific.Outbound indirect flight with Cebgo, departs from El Nido on Thu, 24 Dec, arriving in Manila Ninoy Aquino.Inbound indirect flight with Cebu Pacific, departs from Manila Ninoy Aquino on Sat, 9 Jan, arriving in El Nido.Price includes taxes and charges.From $433, select.

Manila.$456 per passenger.Departing Fri, 11 Sep, returning Mon, 14 Sep.Return flight with Cebgo and Philippines AirAsia.Outbound indirect flight with Cebgo, departs from El Nido on Fri, 11 Sep, arriving in Manila Ninoy Aquino.Inbound indirect flight with Philippines AirAsia, departs from Manila Ninoy Aquino on Mon, 14 Sep, arriving in El Nido.Price includes taxes and charges.From $456, select.

Manila.$562 per passenger.Departing Thu, 24 Dec, returning Tue, 29 Dec.Return flight with Cebgo and Philippine Airlines.Outbound indirect flight with Cebgo, departs from El Nido on Thu, 24 Dec, arriving in Manila Ninoy Aquino.Inbound indirect flight with Philippine Airlines, departs from Manila Ninoy Aquino on Tue, 29 Dec, arriving in El Nido.Price includes taxes and charges.From $562, select.

Find the cheapest month to fly from El Nido to Manila Ninoy Aquino

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like El Nido to Manila Ninoy Aquino flights are currently cheapest in October.

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El Nido to Manila Ninoy Aquino: Alternative routes

Compare routes from El Nido to Manila below. You may find an airport to fly into that's cheaper, faster, or easier than Manila Ninoy Aquino.

Manila Ninoy Aquino

10km from central Manila

Closest

from $340

Search flights

Luzon Clark International

80km from central Manila

Cheapest

from $186

Search flights

El Nido to Manila: Flight information

The things to know before you go.

Cheapest flight found	$340
Cheapest month to fly	October

Finding cheap flights from El Nido to Manila Ninoy Aquino: Frequently asked questions

How much are return flights from El Nido to Manila Ninoy Aquino?

The best price we found for a return flight from El Nido to Manila Ninoy Aquino is $340. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

Which airlines fly direct from El Nido to Manila Ninoy Aquino?

Currently, there are no airlines that fly direct from El Nido to Manila Ninoy Aquino. But we found flights with one or more stops from $340.

How many flights are there a week from El Nido to Manila Ninoy Aquino?

As of September 2026, there are no flights flying from El Nido to Manila Ninoy Aquino.

When is the cheapest time to fly from El Nido to Manila Ninoy Aquino?

The cheapest month to fly from El Nido to Manila Ninoy Aquino is usually October.

Which upcoming date is cheapest to fly from El Nido Airport to Manila Ninoy Aquino Airport on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from El Nido Airport to Manila Ninoy Aquino Airport on Wednesday, 21 October 2026.

Can I get a direct flight from El Nido Airport to Manila Ninoy Aquino Airport?

No airlines currently offer direct flights between El Nido Airport and Manila Ninoy Aquino Airport. Most routes have one or more stops.

How can I find the best flight deal to Manila Ninoy Aquino?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Manila Ninoy Aquino but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to Manila?

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Manila is around 40 days in advance, so don’t leave your flight to the last minute.

Which is the cheapest airline to fly from El Nido Airport to Manila Ninoy Aquino with?

Currently, Cebgo offers the cheapest flight tickets to Manila Ninoy Aquino.

Travelling from El Nido Airport (ENI) to Manila Ninoy Aquino Airport (MNL): what you need to know

The average time for a direct flight from El Nido Airport to Manila Ninoy Aquino Airport is 1 hour 30 minutes.
El Nido and Manila are both in the UTC+8 timezone. This means you won't have to adjust your watch after you land.
Flights from ENI to MNL start from 07:40 — the first with AirSWIFT. The last departure is at 21:10 with AirSWIFT. Overall, you can choose from 49 weekly El Nido Airport to Manila Ninoy Aquino Airport flights.
For a smooth journey, turn up at the airport two hours ahead of international flights and an hour before domestic departures. This ensures you have enough time to board your ENI to MNL flight.
During popular months such as May, it's a good idea to get to the airport earlier than usual. Arrive two hours before domestic departures and four hours ahead of international flights when you travel during a peak period in general.
Air Swift is your gateway to discovering Manila (and maybe even some other great parts of the Philippines!). Check out the direct flights from El Nido Airport to Manila Ninoy Aquino Airport offered by this carrier.
Air Swift is the airline most travellers choose for this route.

How to find the cheapest flights from El Nido Airport (ENI) to Manila Ninoy Aquino Airport (MNL)

At the moment, $136 is the lowest price we've seen for a one-way El Nido Airport to Manila Ninoy Aquino Airport flight. The best price for a return ticket is $340. Remember that fares may change due to demand at the time of booking.
Book three months before you want to fly. After looking at the numbers on our calendar, this is how far you should book ahead to secure cheap tickets from ENI to MNL.
The cheapest month for flights from El Nido Airport to Manila Ninoy Aquino Airport is August. Use the 'Whole month' tool to find the lowest airfares if you have flexible dates.
Save time searching for cheap flights from ENI to MNL by setting up a Price Alert. You'll receive an email or push notification on the app when a lower fare pops up.
Choose your ideal departure and arrival times, number of stops and airlines with the filters. Or sort your results by 'Cheapest' to find the best deals on flights from El Nido Airport to Manila Ninoy Aquino Airport.

Handy information about El Nido Airport (ENI)

Central El Nido to El Nido Airport is approximately 5 kilometres. Depending on traffic, it'll take about 15 minutes to get there if you're ride-sharing, catching a taxi or driving.
Planning to take public transport? Expect a trip time of around 20 minutes.
Get your holiday off to a leisurely start by staying near ENI. Whether you've booked an early flight from El Nido Airport to Manila Ninoy Aquino Airport or want to avoid feeling rushed, these stays are perfect:

Arriving at Manila Ninoy Aquino Airport (MNL)

Consider staying in a hotel close to MNL if you have a late El Nido Airport to Manila Ninoy Aquino Airport flight. Select one of these accommodation options and avoid the hassle of a long transfer:
Travel at your own speed with a Manila Ninoy Aquino Airport rental car. Pick up your wheels from Hertz, Thrifty or Europcar and venture far and wide through Manila and beyond.
Get the best deal by booking your ride from Manila Ninoy Aquino Airport about four weeks before your departure date.

Getting from Manila Ninoy Aquino Airport (MNL) to central Manila

From Manila Ninoy Aquino Airport, Manila is approximately 11 kilometres away. It takes around 30 minutes to reach the centre by car.
When travelling on public transport, expect a journey of around 1 hour 10 minutes.

When to fly to Manila Ninoy Aquino Airport (MNL)

It's time to work out your dates for your flight from El Nido Airport to Manila Ninoy Aquino Airport. May is the most popular month to visit Manila. If you'd like a more laid-back vibe, go in September.
Before locking in your flight from El Nido Airport to Manila Ninoy Aquino Airport, think about the type of weather you enjoy. May is the warmest month in Manila, with temperatures ranging from 24ºC (75ºF) to 35ºC (95ºF).
If you'd rather travel in cooler conditions, look for a cheap ticket from ENI to MNL in January. Average temperatures are between 21ºC (70ºF) and 30ºC (86ºF) then.

Explore more of the Philippines

Manila has plenty to offer, but there are so many other corners of the Philippines you'll want to see. About 8 kilometres north-east of Manila, a visit to Quezon City will keep you on the go. Start with leading attractions like Botanical Garden & Arboretum, Christ the King and Art in Island.
If you're ready to explore another side of the Philippines, consider Taguig, about 13 kilometres south-east of Manila. The Mind Museum, Metropolitan Museum of Manila - BGC and One Bonifacio High Street Park are the start of reasons to visit.